NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210393_10001246

Scaffold Ga0210393_10001246


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10001246 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21574
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (82.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003435Metagenome / Metatranscriptome487Y
F011329Metagenome / Metatranscriptome292Y
F013828Metagenome / Metatranscriptome268Y
F105590Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_1000124613F011329N/AMTHGFDIQFCGNLEACRTEARILRPSTQPDDALVALVYETSHGLIVSYFGSAVANPTLPGLDAAIAEARSELLHYLNRRGENPPKGITRPGLSLWLTERDDETVMGIPLK
Ga0210393_1000124615F013828GGAGMRGWSCGAGVGSQCASAALIGPRRQGRSMSKWRFAVALPFLTSFSGCIEVTTYVSPSASGTVIDAASQKPVQGAAISVDGHPGLFAQTNADGQFLLVPATRKTRIFVLAPYESHLPSGTLVVSADGYASQEIVVKGSANSLLVSLNRVR
Ga0210393_1000124628F105590GAGGMTYGSDGKTPSVWIRVVGMIGAVYIVVYGAMGLWRDDLLVSLSKSSSNGVHLHGPLAWLCFAGFVMFSIGLVGLVAPEFGDAEYDIAARRRRFGPILLVGLAFYVGSTVIAGLRS
Ga0210393_100012469F003435N/AMRITPAPPALRRWRLWVGAVLVAEICWFALLRPRIAGNFGAVLTLTLLPLTAVGYVYLMAAVSAYLADRDWEFRFRQMIVIMLGLSVGCFVFALLWLAKVHFEGELR
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