Scaffold Ga0210393_10000556

Overview

Basic Information

• Taxon OID: 3300021401
• Scaffold ID: Ga0210393_10000556
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33440
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F016051	Metagenome	250	Y
F036872	Metagenome / Metatranscriptome	169	Y
F055974	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210393_1000055619	F036872	AGGAGG	VKNAHLRFGSLTYVKSTEKTTTSIKLRLDRFIGEVLPDPPRQAKAHLISVIAGDTQISAVSAAISMGDRFMVDGPDVPPIRVCLERNAQCFKGSVQLAGRKKPLRHLIGVSEEFASGNMSANLGKTLLASSDNRFVWASIAHIHGIPGIPEWAGWFAEELNMHRAITRALGIGCDPVIVKGQKEQFLDWLSWGVESEAIRFPAETGSIRWPSVSIQDLLLPADHS
Ga0210393_1000055621	F000208	GAG	VSTKTELYEQRKQQHIERGYRIEDERPVPVNGFCSFIAVREESDSDAVDALVAEALGGKT
Ga0210393_1000055625	F016051	GAG	MTASLMRGGEDETVNHDVSYLEDHFEALVPFGYENDCGGFGDVVLDVSARKLTVERNNRFEDYTTTTYEV
Ga0210393_1000055637	F055974	GGAGG	LKESKSSRLLRRVTVLAKIKQASLVVCLFLFLFVVLGGGLHLNPGGAFLAAATGTPLVIHVFNRRWLGRSVEHDSSLTSQRPGSARYFAEAQASHPPSLEPERAVRQ