Scaffold Ga0210393_10000095

Overview

Basic Information

• Taxon OID: 3300021401
• Scaffold ID: Ga0210393_10000095
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99570
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (75.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000664	Metagenome / Metatranscriptome	950	Y
F007270	Metagenome / Metatranscriptome	354	Y
F062249	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210393_1000009514	F007270	AGGAGG	MRLARPVYESLPVIYMLIGGLAILLFYINPLGFAGKAAFLIGVLAETAALTLFLRRRDFRELSREYNGETIELPSSLKG
Ga0210393_1000009515	F000664	GGAG	MADNSMTGTFQIPKDLLSEAKRTSKPKSEQLHVEGWRNSWLSRIAELLVGKD
Ga0210393_1000009549	F062249	GGAG	MLSLFMERLLAVGALILLLTGLAGCSAEQNELGRHVSPNQKLVAVLMESMTGGAAGSVYEDIYVSDQGIPLNLHDPIFGAVGCDRLTFDWTNDYTLEIHYESTCVIRQFTNRWFRPSDLAAGRPNPIEIILNRQ