Scaffold Ga0224422

Basic Information
Taxon OID	3300021400 Open in IMG/M
Scaffold ID	Ga0224422_11704973 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021400 Open in IMG/M

Scaffold ID

Ga0224422_11704973 Open in IMG/M

Source Dataset Name

Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	96516
Total Scaffold Genes	123 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	94 (76.42%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

96516

Total Scaffold Genes

123 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

94 (76.42%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location Name	New Zealand
Coordinates	Lat. (^o)	-42.26	Long. (^o)	171.6	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

New Zealand

Coordinates

Lat. (^o)

-42.26

Long. (^o)

171.6

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041054	Metagenome / Metatranscriptome	160	Y
F042737	Metagenome / Metatranscriptome	157	Y
F052997	Metagenome / Metatranscriptome	141	Y
F084920	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224422_11704973111	F084920	AGGAG	MDKEFGMQELYFVQLKSTYPIEVKGQLIAAGEVVAAFDRIQIANFKDISREVAAQGGYQNRKLVIWDRVEGVDLVFAQGIFSKTQLALMNNARLVSLGQDSTIPIAEREELETNENGIITLTHVPLSSWIFVYNKETGEKLTGLHRIDSDKLQTDPPLAYTDVIVDYEYGYNGGADVNLIGEEIFDGYLSLEGRSRFKDDVTGDTHTAIIRIPKLKITSDFNLTLGKNAQPIVPKFTGIALSEGPRKESKAIEIYFLEDDIDEDSEWR
Ga0224422_11704973114	F041054	AGGAGG	MAVRNCADLGVNAQYIMKRLLANQNLLKLLYYTDKDPLSHEDLTAEQIQDEVFEKLVKIIPRVGPKETAHSLVVIRIARGRGLASNSEFKNVTIGIEVFVPMTQWIIKDTNLRPFAIMGEVQKSLNGKKIEGLGKMDGGDFDLNFLTEEVSAYEQIFTITSYD
Ga0224422_11704973115	F052997	GGAGG	MGYYEDVYLKRLNRYGIDFQSRMQRQREENFARELKRSVYYINFDWENEEREGELTPYKQDETKTVRYLLTDVHLDMPNGTLLMLPDKDQILEPWMIYWLEDYVASGYNRYIVLKMTHYLTWTNREGEECSTWAYFYGQEDNMLKDELKSRSRNKTLYTENLKLSFFITPLNENIRKDDYLEVGEGKLKEAYVVTGYDIQSTPGVEFVSVDPQYIRDLTPPPTPEPGEDIDDFYWFNQGG
Ga0224422_1170497388	F042737	AGGAG	MKLTEKSAEVLNYVKSNGGKVSIPELAEALGRSERSVGANVTDLTKKELAAREKVEIEGAEKPITYVVLTDAGMEWVPAEDAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224422_11704973

Overview

Ecosystem & Geography

Associated Families

Sequences