Scaffold Ga0224422_10048186

Overview

Basic Information

• Taxon OID: 3300021400
• Scaffold ID: Ga0224422_10048186
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 412324
• Total Scaffold Genes: 614
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 161 (26.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028722	Metagenome / Metatranscriptome	190	Y
F057815	Metagenome / Metatranscriptome	135	Y
F063246	Metagenome / Metatranscriptome	129	Y
F072887	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224422_10048186205	F072887	N/A	MKLKTDNMEKCMRCGHELIIGGNFMLSDFNGEDLAEEDDAMVTNAHCPYCGARYELYDTPESEKKNYPYWSN
Ga0224422_10048186369	F057815	AGGA	MAKKIKDSDILKAMVMHLDEDSVVFGANGHYAVGAYYDITKVSSVFGDKDYNSQDNIDAADETKAAELYRTNNDELDEGFQKAEWLKNY
Ga0224422_10048186385	F028722	N/A	MANTVQNGQTCLEKRGMEERHQEITRSDYNIENQYGPTHPDAISDGDAQGKGTGHGGHTHFLPDCTKPTTQINYSNFDTENGGGYYDIKGRNGISGRERALAISMYNKETPYGANLVDTTQNVNDGQYFFGQQIGQKTTT
Ga0224422_10048186409	F063246	N/A	MPRFKIELNDVQNIRDLLQSAYNLADEQIVQAQNEINKLSVSTQLEQEAMDAKSKYAKAINDYLGMKDKAISKKLDIAKILTDIYHHNGDVKSAMENGENMKNMDFNFDDIKKMIDESYEEKDKDKTKTIELNKK