Scaffold Ga0224415_10004176

Overview

Basic Information

• Taxon OID: 3300021399
• Scaffold ID: Ga0224415_10004176
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15745
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044826	Metagenome	153	N
F054467	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224415_1000417610	F054467	AGGAGG	MLRRYMRPAELATEFGVSPDFVRDIIRCIRVNIRQRTRYSPDDLISSGKVVSVRTAAYMDAARHRAHINTDMEQFLPVYDPISTEIDLHLIEPQTVDIEGITEQVIRNIKSKLMAI
Ga0224415_1000417614	F044826	GGAGG	MSIVTRSIRAYRRLSGAIAAELRVEVKGETPTTWQIQGLHTKAPFAIIDGHRYDLQTHEVFALRKAISEVS