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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021399 Open in IMG/M |
| Scaffold ID | Ga0224415_10002637 Open in IMG/M |
| Source Dataset Name | Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20941 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (77.78%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | New Zealand | |||||||
| Coordinates | Lat. (o) | -42.26 | Long. (o) | 171.6 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041054 | Metagenome / Metatranscriptome | 160 | Y |
| F052997 | Metagenome / Metatranscriptome | 141 | Y |
| F084920 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224415_1000263712 | F084920 | GGAG | MDKQFGMQELYFVQLKSTYPIEIKGKQIAAGEVIAAFDRIQIANFNEIHKEASAQGGYQNRKLVVWNRTEGVDLVFTQGIFSKTQLALMNNMRLISLGENQVVRIAQRDELETDSEGKITLTHKPIDSWIFVYNKETGEKLTGLSFVDQQTLQTPLIYKDVVVDYEYAYDNGADVSFVGEDIFEGYVSLEGRTRIKDDRTGETHTAIIYIPKLKITSGFNLTLGSQAQPIVGRFHGTALATGARKQSRALEIYFLDEDIDKDSEWR |
| Ga0224415_1000263715 | F041054 | GGGGG | MKVRNCSDIGVNAQYIMKRLMANQDLLKLLYYTDKDPLSHEDLTQEQIQNEIFEKLIKITPRVGPKETANSIVVIRISRGRGLVTNEEFKNVIVGIETFVPMTQWIIKGTNLRPFAIMGEIQKSLDGKKIEGLGKMSGGDFDLNFLTEEISAYEQTFSLTSYD |
| Ga0224415_1000263716 | F052997 | GGAGG | MGYYENVYLKRLNRYGVDFQSRIQGQREENFKRQLMKSVYYVEFDYEGKTYEGELTPMRQNETKVMQYLLTDVYLDMPSGTLLFIPDKNNELQPWLIYYLEDMKASGYNRYIVLKMTHMLSWQDRQGVSQTSWAYFYGQEDNMLKDELKSRSRSRVLYTENLKLSFFILPLNEKIRKDDYLEVYAGGKLESIKEAYVVTGYDTQSTPGVEFVSVDPQYIRDLTPPPEKQEGENDDDFFWINGGAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |