Scaffold Ga0224415

Basic Information
Taxon OID	3300021399 Open in IMG/M
Scaffold ID	Ga0224415_10000112 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021399 Open in IMG/M

Scaffold ID

Ga0224415_10000112 Open in IMG/M

Source Dataset Name

Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	129491
Total Scaffold Genes	226 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (21.68%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

129491

Total Scaffold Genes

226 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (21.68%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location Name	New Zealand
Coordinates	Lat. (^o)	-42.26	Long. (^o)	171.6	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

New Zealand

Coordinates

Lat. (^o)

-42.26

Long. (^o)

171.6

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027710	Metagenome / Metatranscriptome	193	Y
F042680	Metagenome / Metatranscriptome	157	Y
F066344	Metagenome / Metatranscriptome	126	Y
F072887	Metagenome / Metatranscriptome	121	Y
F082004	Metagenome / Metatranscriptome	113	Y
F102225	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224415_10000112101	F066344	N/A	MGKFLQMMSQNDSKALAARASQINTQAKIAQEEIIHKLKIEKTNVEMQIQGLTDFAPDTTDSLRPGVKGWNPTKWAADLQSAKTRLYELNVELKIAQSTFDEFFGDDEETASAE
Ga0224415_10000112115	F027710	N/A	VLLQLTTNMHQPMEKNKLYILIDKTLKPVYGCVQGGHAVAQWMLEHKNTHLWDNEYLIYLRADIIKWRRKLDLLGVEYSEFREPDLDSRITAIAVHGHEELFKNLDIVTKD
Ga0224415_10000112138	F042680	AGAAG	MVVQDIKPIVKGIAKLQYIMSGGIAVYHIFDVDGNKYQLEIDLSDKHDVGETAAFKPTEKGVLLMRWIRRANENDTLIKIK
Ga0224415_10000112159	F072887	N/A	MEKCMRCEHDLILEGNFMLSEINGEDLSEEDDAMVTYAHCPYCGARYELTDTPESEKRNYPYWKIGV
Ga0224415_10000112209	F082004	AGAAG	MILHLNLTEDHLKLVRFLNIEDKDDDVLTINKKVMLTMQTHILDDVAMILGLRDKAIKNTEEDADGAAYPDDVEQYMLDTYNYVSENLYLIETLLHQKVFEGIKPGHYKAKDNEMVWEFC
Ga0224415_1000011298	F102225	N/A	MNRPYEDDYNVYGFNMWANGDIFFEYWRPFTYEEWIRNGRPINDGGVKLDDGTEHLVTFR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224415_10000112

Overview

Ecosystem & Geography

Associated Families

Sequences