Scaffold Ga0224415_10000056

Overview

Basic Information

• Taxon OID: 3300021399
• Scaffold ID: Ga0224415_10000056
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 182655
• Total Scaffold Genes: 360
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 224 (62.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F017772	Metagenome / Metatranscriptome	238	Y
F049349	Metagenome / Metatranscriptome	146	Y
F072829	Metagenome / Metatranscriptome	121	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224415_10000056124	F017772	GGAGG	MNEPRLKILPPWTITIRKFEALFDGDPQIACNCNFGGATPSIVLACNDGDKVAALLQILPEEVDFGNVKLKVMVDGTPSNRVFKSKTDLFDTAFAKNPAYAYSVCPAEKGYQWIGTTYVVFNNCVVQFAADNLNDCHGIISTLYETIAGELLTGPATEGVFFNTNVERAGLGMPLGEWP
Ga0224415_10000056199	F072829	AGGAGG	MSEQHTIYDDMIDEYFNRHPDAGLAWWMLPLKEQPEGFKLEMYDILWDLTHKENKDE
Ga0224415_10000056345	F087968	AGGA	MIKITKSHARTLYNAGKEIMILPNKMRTDSFMASWTTKPENDPSADFDKLCNAISYYNCSPETGMGLAYYVKEM
Ga0224415_10000056355	F012184	AGGAG	MNKNEILNTILSIPGASMARQNKTNFVVIPADDGIIKVSVGTALSIDTKAHKAFNAEAAIAEYKAWEAEAALREAEKATKPVKVKGPNPEAQARRDELDAKVSALPAFTEYTATDILNALAGQVAENVTVMAVGQSAKRLVEKGVLTVGNREGDKKSYYTKA
Ga0224415_1000005670	F049349	GGAG	MEEFGCPYCWDSRKQKEKKVLWFLDAANNLRECEYCPKCGRKYGEVPMNEQLESTITTK