Scaffold Ga0224415_10000053

Overview

Basic Information

• Taxon OID: 3300021399
• Scaffold ID: Ga0224415_10000053
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 184104
• Total Scaffold Genes: 289
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 232 (80.28%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017772	Metagenome / Metatranscriptome	238	Y
F102241	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224415_10000053124	F102241	AGGAGG	MTKTIFYTTLENQIRADGSKGLLYDHYDNLHDALAKYYTICAAAVNSDLPYHSAHILRSDGVIIEAHIFDNRSPIIEGGLN
Ga0224415_10000053212	F017772	AGGAG	MNDVRLKILPPWTITIRKFEALFDGDPQIACNCNFAGSNPSIVLACNNGDKVAALQQILPSEVSFGNIKLAVSVDGTPSNRAFTSKVELFDTAFKGNPVYAYSVCPAEEGYQWIGTTYVVFNNCVVQFAADNLNDCHGVISTLYETIANELLTGPATEGVFYNTNVERAGLGKPLGEWP