Scaffold Ga0213868_10367088

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10367088
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 805
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005882	Metagenome / Metatranscriptome	387	Y
F102833	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_103670881	F102833	GGTGG	MGFLDKIVSVALPTAIGFATGGPAGAFAGAVSGAEAEKAKRKAKNRMISEQQRYYDTGGQEVYIPSDISQGSTIAQRQIGQTTNAGFGSSIGSFLSDVGSNIVGPLSGLFSQVRPFISQQSVGQPALPTRTNLGGQESQSSGVTEGFVGGMGNVLGQAARFLRTPAGQVGTGLVTGIGASMLGGGNGGMRITRKMKSQYRAVLNL
Ga0213868_103670882	F005882	N/A	LDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGTIKNVGG