Scaffold Ga0213868_10211445

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213868_10211445

Scaffold Ga0213868_10211445

Overview

Basic Information
Taxon OID	3300021389 Open in IMG/M
Scaffold ID	Ga0213868_10211445 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1156
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018081	Metagenome	237	Y
F063082	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_102114452	F018081	AGGGGG	MKHFNNRKFSLMNYMCDILFDFYEKNKLEHMCALESRMSGNYKTEDQKEWLERFGDVWDRVENREVERSVHKCXHSMLVRVNLSLFI
Ga0213868_102114454	F063082	AGGAGG	VTQYKDIVEKQNQKLKAEKDANTLVSLGWQREEIGKPNVVRHKMYRNRVEYEYSD

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