Scaffold Ga0213868_10177182

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10177182
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1297
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F031662	Metagenome / Metatranscriptome	182	Y
F044429	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_101771823	F020533	GGA	MNKCIVKGMFFMQDAILLEQDDLIREFERKVRDKKIFFEVINPGETESKGVDIQAMLEENNKLKSELRIFKDIVDHSITADARRGFDV
Ga0213868_101771825	F031662	AGGAG	MDFKIEKNIPVRRFNSPFCEALDKLEIGDSIGNLTKKEVYKYRPNFYTPNFKDRKFTFKKESGSMYRIWRTA
Ga0213868_101771826	F044429	N/A	RMPECEWVLVIKYGDPYTNTPLTTGFGPFKTKEDADDFRAQYYYDQIVIADIVPINAVLPQSATELDIDFVPEGKVVDISSKINPHKH