Scaffold Ga0213868_10055309

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10055309
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2729
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F007093	Metagenome	358	Y
F048277	Metagenome	148	N
F067200	Metagenome	126	Y
F096927	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_100553091	F048277	AGGAG	MFHLWHILAIVGVFVLGFILGRLSMKRKYEAKVEELENRKESIEW
Ga0213868_100553092	F096927	AGGAG	MQQIKRRVELAEGVLETEEGTKAFKHRSFLIRLYNEKLSRLSENKRNQANIKDTERLAEKYNWQLEELKTRGIARQKERLKTRGDFLKKEAEILLEQIEEHNSILRGEN
Ga0213868_100553093	F067200	AGAAG	MKTETIMPRFKSYRPFKPEWKYEKKCCKECDKEYLTDNMMGAKKGSYNFFWFCIRCYNLSKQS
Ga0213868_100553097	F001689	AGGAG	MKLKKEYEMTFKEGFRLGVRLTRAKAYIENARDAKRLGDETMAELYTEFAQEWNDLARNAGRKFCPTAAHEPEQSAFDFGDIEMQEHLSKLPHQLKETG
Ga0213868_100553098	F007093	N/A	SMPGMTSVRHTAERWFDETKCEDRRVDIENVLYDAAAEQGINPIYTQTWCLESNMFVINN