Scaffold Ga0213868_10019076

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10019076
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5398
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022391	Metagenome	214	N
F027520	Metagenome	194	Y
F054042	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_1001907610	F027520	GGAG	MNSALRNQILAERRRDRRNDILASVIGWTVTIAGAFVGACLFYAVTFTFLSIGL
Ga0213868_100190763	F022391	GGAG	MTQGDYVKINSTNEMELKLKHLESRIRGWDYQTALTIKLEPHRDPSSLSQDALFNIWCREIADAMKTKTPSADAEAWKLWLKQKFIGTYRVTVGRDVIGGQVYATPKGKGNMAKFMHKVLVFADTKLNVRLSVPRNSEYVRVRQNELEKESKQKAKEETNHTAGSGKGSSATAKTRSSKGEQQLGLL
Ga0213868_100190765	F054042	GAGG	MIEDQTPFIQIVYEEIEEYGLYDHKIKLFNLMEAALNGMCGKARKEIDELWWEVQDYKEKLAIPPDESELALHHPTMSV