Scaffold Ga0213868_10017601

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10017601
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5669
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F023580	Metagenome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_1001760115	F007366	N/A	MRGTPLKETKLGQWFKTKAPKVFDLIGEIVPGADALKAIGALIDNTETSNEEKIKAKLLMEEIANADRANARNREIEITKSLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVEDKEIFFHILGFAEGTLVGQVVNYYFGSAKN
Ga0213868_100176012	F011489	AGAAGG	MDSGNRKGWNSFLTKHYSKLVRIARRWTDNPSDLVHHTYLRCIDKRFPDGDNETALGYFVKAMYNEATRGKFKDLYHVTDADPKEQAFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSGVGESTLYRSLHITRKILKDVLRNGTKED
Ga0213868_100176016	F023580	N/A	MNNIKLFLVRNYGSTLNAAETLDVTPNTVRNWCGRSPRNILKHLPEISESCGATYAEIVEEVLICEREGVI
Ga0213868_100176018	F013089	N/A	MGQSKIKTIQPNGTYDSQNGLMYKFEVELESGECGEVSAKTENRWNVGDEVEYDITESKWGNKIKLTKPGFNTNQSKANNPDIQKRIDASWAIGHAINQESDPEKILEAAEFLLSIRNTLISKL