Scaffold Ga0213868_10014442

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10014442
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6403
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046916	Metagenome / Metatranscriptome	150	Y
F052477	Metagenome / Metatranscriptome	142	Y
F078426	Metagenome / Metatranscriptome	116	N
F085395	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_1001444211	F085395	N/A	MRTTQQFKKDFPDLSPQRRTTAYHLLEVVGVSEELERLSRGNSVDSRAILEQILSNIQENGNYIP
Ga0213868_1001444212	F052477	GGA	MSQPDLQTTKRYYRSFMEWAQLCVPMKYMAMGLRTASKEEILGLIREWAETITRKET
Ga0213868_100144428	F078426	N/A	MKKTEKEIEEMGIHSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0213868_100144429	F046916	GGAGG	MRSKRIDAADWLDSIAEEEALPETSERMSEKEAFELAQGAGYDTERDAVERIRALIDRNL