Scaffold Ga0213868_10011418

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10011418
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7390
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048839	Metagenome / Metatranscriptome	147	N
F057992	Metagenome / Metatranscriptome	135	N
F063089	Metagenome / Metatranscriptome	130	Y
F088518	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_1001141813	F048839	AGGAG	MINAFNLDRSLATKHEGLIGRAMQRAAKSEGHLQVVPKLIVTNVGKRSDGTRSLGDMALNHLQSISPQRLILTEVTKAIAGSDLPTTRYSVKYALQSLINRGLIQHAFLRRNLIEYWFEVDEDL
Ga0213868_1001141815	F057992	AGGA	MNLATITITNRLPTDTGFALRQDDGSFAQVFVPSHIYRGAGMQIGHTYDVVLAENSEALRATTPWRVCQMDVGPVNGQQPAPEKAAPRPTPSALIDDRILEQLSASLYMTTGEITTALGASGTIVRDRLMAMFNRNQIVRADVHARPNLQRATMCLWAIDIDAFIAEGE
Ga0213868_1001141817	F088518	GGA	MTTRSDRDEILFLEGAIQRTEKMAANMLAEYGHGVRPSFVSADLADYGDRISRYKAEIARLEAAQHG
Ga0213868_100114185	F063089	N/A	MTLRLQLYALALLAFVAGLLQWRSAYVDAKLNEMARKQAEVRLDAALRRMEREHEIETLGDVGLGERAAKFLRPNADKR