NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10010620

Scaffold Ga0213868_10010620


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10010620 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7734
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012872Metagenome / Metatranscriptome276Y
F013704Metagenome / Metatranscriptome269Y
F014505Metagenome / Metatranscriptome262Y
F016957Metagenome / Metatranscriptome243N
F055664Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0213868_1001062012F013704GAGMNFKRKMLNGQRFEVSGMEFICIETHAYLQTRVDGEDSDIDVGSSYYIVRNTSTGKLHRIPFQRIIEKENEIKWKN
Ga0213868_1001062013F012872N/AMDLHFEGNRLYYMEKEAELYRCLDYLSKELSEQDKMTTEQLWEVFHICADTAAVYRHITDYFTTLDRLILDARIKNGNLKQEVYDLKKENARLQESLERYMDEF
Ga0213868_100106202F055664N/AMESKKTSSQILINRKNLEMFIHILTQVHMRGHLSADEQAFLGKFVDLPERPTTPNRSQRRLNQKMINQIIREERKRNLEE
Ga0213868_100106208F016957GAGMQLRNYLKDKRKLTENRTKVCVEVGKTGEALFKEITGALKSNLADDKKHIDFYWGEKLVDVKGLKKMHLSGYILLEFINVWGGDGWCSKKSKAEYIAFQFPDAFYVFRKKHLRVRAIELCEPFNKDKVERRNYIPYDDALHKWVGRWNAQDVFTYVKFEDVQDLVFEVLPYTIKE
Ga0213868_100106209F014505N/AVGNIENFYRENFKRLTGFIKQYTDGSYEVASDIVQMVFVRLLEMEGEGRTNFYEEDSLNFFYVYRSCINTALKYQRTKKRIDKISLEDMTHDQLEFEEYPEQKVAMEKLITYMEEELDEFHWYDAKMMRIYMNGTSMNKIHRESEIGLTSIKNTIKNGKARIYEKVKEDYQDFQNGDFDK
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