Scaffold Ga0213868_10006095

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10006095
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10699
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008563	Metagenome / Metatranscriptome	331	Y
F010105	Metagenome / Metatranscriptome	308	Y
F014036	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_100060953	F014036	N/A	MILELFGILFIIGLSFLFHMVVYEDDWVKEWYWKVLIGGGILLVVFLAIMGY
Ga0213868_100060957	F008563	AGAAG	MAKKIKLVSHMGIAFSTIGGQKYLFPGWIPVEDHISFDDVEVINPYRNIKRETFEVLGSTGNKYTVTKNGNRLSCDCPAGKFRGTCKHSKKIAAELELS
Ga0213868_100060959	F010105	N/A	MEHIKEYDSFVNENLDTIKKTVLDFAEKNGKSKWKELHSVILKQKGLDPNDRDNRGQFSSYFSGGSSWQRGKGGANGRDANSHGLLMRPTKKDPRYLEKDGNEYVVKVWDGKSKLS