Scaffold Ga0213868

Basic Information
Taxon OID	3300021389 Open in IMG/M
Scaffold ID	Ga0213868_10002413 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021389 Open in IMG/M

Scaffold ID

Ga0213868_10002413 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17934
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (21.05%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

17934

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (21.05%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F029447	Metagenome / Metatranscriptome	188	Y
F042621	Metagenome / Metatranscriptome	158	Y
F059985	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_1000241312	F029447	N/A	MNIKSLTLKNKLIVDETGEGYWDLTAPSFIYESDLGVKALHYVMQDEVGRMDKIANTYFGSGEFVDAICVVNNIFNPFSVNEGDILVIPNLSRKDLVYKRPNPATRPNDVQEAYVDTGRQSEKDQARIQRLIEKAKKSEAGVKQPMPPNMLQPGQESKTYGGGKIQLGTNLPSRNTKAN
Ga0213868_1000241314	F004606	N/A	MKAHRIFTKGQTVYCLLSSFSRPNVLLPVKGLIVDTQWDPINPLYQIRIIKMYDNMKYLKSNFFDMNFKYEFENRARKMPLKKEDFKNVKSLEERFDENDRERFYVIVESVMCKKTKNDLHGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSPQEFNIRFKKGWADKFQRGDIDIDKYLNSLG
Ga0213868_1000241316	F059985	N/A	MIKIVLEPARNGVIKKVIGDNHGGGKEQWTSVDVFESTDDQRNKYEYIMRFFWELCEDLGLECGNKFEKDVLRIKKEWGTHYEPNKKEIESKIKELQAEIDLLTEWKQA
Ga0213868_1000241318	F042621	AGGA	MENTELIKLQWIKGDKIGTVETISSTEGEWTIFNSGGRISTNLIGEFLQPVEGEPLDFDNVPSPSPALKKAAEIYKEKVPQKTVSSPIRTLFDKQKKNDKIKLNLSFPIEIPKKAIYEIISSSFDLDEVNNELESFIKDQINDDLIYDSLFDSIKELISTRYKID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213868_10002413

Overview

Ecosystem & Geography

Associated Families

Sequences