Scaffold Ga0213868_10000272

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10000272
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48750
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (15.79%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004370	Metagenome / Metatranscriptome	441	Y
F004479	Metagenome / Metatranscriptome	436	Y
F050748	Metagenome / Metatranscriptome	145	N
F051536	Metagenome / Metatranscriptome	144	Y
F052947	Metagenome / Metatranscriptome	142	Y
F057746	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_1000027214	F057746	N/A	MAIVGSFQEDLDIYLAENKGRGGASKQSDKDLSGIGSTAKGELENGKMYSFEYFTPDETFYDTYPIVLGLGKSIDNHQLGLNLHYIPYETRIPFLSDIVRSFKNVITTSVNKAPGNPAAQSRLSEFTYENLKKSLGRKYNITYAIRQYRMDRIKKPRMLGYEDWYIGAVNNQNHFFGGNINEAQALYYKNI
Ga0213868_1000027228	F002407	N/A	METTINKIDGYELSSFVRKLLPIDKFIFMKIAKEGTVSSVYFPERDAVKLVNTPTSDIFDADIKEPVKVSFYNGTKVIDALSHFNGDVKGRIKYTEYDGELMASDFILENEDLQINLACTDPSLSFMEMSKEETDRAFGVDSKMFDFDLLTTHVDKMKSLFNLDKDEDIFTLYIGEKGINIKGTSYDATLCHSYDSNVEKGAKVVIYKKYINLLDKENYKVSVCENKVVFKSLDTNTHLTVAVAITDED
Ga0213868_1000027229	F050748	N/A	MKDKALAIGVSSLEFTNILCSYYPKGIKEKFDIYLFVDNTKIDLDKLTGIFEEHDLDIFKNAQIIILNDLYDYYIKKHGYEGKSKEFLLSHGCLFKILMPIYLKEKFGVKRTLVSDDDVFILNDLSYMWDEYEEFGIKKENLFYIRNKDKYDVMDAFNEIFETDFTLEQMNALSINAGNIIYGDDPKLEYYFERFMKHPFIHHQYFNFTGYTSWTVEQRFHHFNIHRYLAEGRKVKFTESKDLRLMQNRDKMMKAGTPPDKYLKVVVPSIIHYAIGVKKPLWLNDFLPGLEWRYGFKYEAKYELKDILYDKNWTPPSFKSIQKNGFILKKELKTKSVF
Ga0213868_100002723	F051536	N/A	MMLIDNTFELGIPNHISFTLFKYDYFDSIIISRVKKECKNLNTLGDGSEYTVKVSSFLTAIKTSKRLRAEIEKAENTSFLPNPSIKPNSIYFILSILRRLKNLEFLTFSVNDDKKYSRLIKNESGLPVLSFHFSILEGIFDLTKLLDRKELDLFNKTLIDFKILENKYLNRKPYFYMKATAILDILASMEIDGKLDSFKIVDYIDPKLEEDDPTLIVKTDYTPY
Ga0213868_1000027235	F004479	N/A	MHTGKVLVGNSGDRVYLQNDKVIKEAGVYPIKFKQQMDWLANCTHPNFIKIKPISDTSFEMKKYPTWYDKICEQPLIKSIDQLDDLIHIVNDFDGYGTDVDTRSYLDKLEGRTGYTYEGNLDASSGWGFVHGDLTVSNILYDNDFIFIDPRGTEEQNYYDYGKLMQSFVMKYEAHIYNERNSKYLKFCREAENIMYEWYDEYQLKFFLAVHLLGAVPFFELNERYELAGMFLKKGHELFDELEIKYSK
Ga0213868_100002726	F052947	N/A	MRTQFLQKLIKKFPNHMELGSAVARYYDLRQSKLTKEECEEIILNSSFRFN
Ga0213868_100002729	F004370	AGAAGG	MYKVRKINFGWYKRRHGILLENLPPLKQRFMLENNYLKWLDSDTQAFEVIFKVEDMNEHEKNPNRILWNPFRETFTNIKELEKDSDIVDWNCAVCKVEIKSRMDSKKVENFVCKKCSEAHNSRNKRVDKRIIDSSVRFLKHCKSLLKGEQREFMTYVRRSSKG