NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213875_10083980

Scaffold Ga0213875_10083980


Overview

Basic Information
Taxon OID3300021388 Open in IMG/M
Scaffold IDGa0213875_10083980 Open in IMG/M
Source Dataset NameRoot-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1486
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.2822Long. (o)-43.5936Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010135Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0213875_100839802F010135GGAGVIRRPAMSGIVGFRPPAAGAGGFRRESFAGAAPASPAIVFICPYGTSIATVRWAVRRLLRDGFQVVAYETTTAVFMAADPAILPGLIAAVRSDVKECISRLRADGVTEFGFFGSSLGSFIFYNCVGDRMPELRWGVFNTGGDIAQGMWRLDGARRKHVQAGWSLDRLSAAWAAVQYPEFGNLDGCRFVFVSSRHDKIAPLGSIEPYLGPMRRAGAQVSVLAVPAIGHFTTIAAGLWRAPRLVAQLRSG

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