NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213875_10000005

Scaffold Ga0213875_10000005


Overview

Basic Information
Taxon OID3300021388 Open in IMG/M
Scaffold IDGa0213875_10000005 Open in IMG/M
Source Dataset NameRoot-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)595146
Total Scaffold Genes523 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)331 (63.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.2822Long. (o)-43.5936Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025788Metagenome / Metatranscriptome200Y
F047212Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0213875_1000000513F047212GAGGMNRQTQLINERYEALMFAKSSEAARRAARELIRIVLGEDAAGRPLEQALRDCCRQLRPSQDPKEQARFEAEFIELAIWPNTNVQRAAAA
Ga0213875_10000005454F025788GAGMKPEPAPKVPGTTEAERMSNALRMVLTVSKGDLLKEEARQKRTREKKRGKKPT

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