Scaffold Ga0223845_10551398

Overview

Basic Information

• Taxon OID: 3300021387
• Scaffold ID: Ga0223845_10551398
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 412753
• Total Scaffold Genes: 611
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 159 (26.02%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027710	Metagenome / Metatranscriptome	193	Y
F028722	Metagenome / Metatranscriptome	190	Y
F042680	Metagenome / Metatranscriptome	157	Y
F048027	Metagenome / Metatranscriptome	148	Y
F051619	Metagenome / Metatranscriptome	143	Y
F057815	Metagenome / Metatranscriptome	135	Y
F063246	Metagenome / Metatranscriptome	129	Y
F072887	Metagenome / Metatranscriptome	121	Y
F082004	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223845_10551398114	F082004	N/A	MILHLNLTEDHLKLVRFLNIEDKDDDVLTINKKVMLTMQTHILDDVAMILGLRDKAIKNTSEDADGSAYPDDVEKYMLDTYHYVSDNLYLIESLLHQRLMEGVQPGHYKAKDNNMIWEKVEDE
Ga0223845_10551398159	F072887	N/A	MKLKTDNMEKCMRCGHELIIGGNFMLSDFNGEDLAEDDDAMVTNAHCPHCGASYEIYDTPESEKKNYPYWSN
Ga0223845_10551398181	F042680	N/A	MVVQDIKSIVKGIAELQYIMSGGIAVYHITSVDNKKYQLEIDLSDKKDVGETAAFKPTEKAILLMRWIRKANENDTLIEIK
Ga0223845_10551398211	F027710	AGAAG	MEKRKLYVLIDKSLKPVYGCVQGGHAVAQWMLEHPHSREWQNDYLIYLSADVPKWRRKLESLDVEYTEFKEPDLDFKVTALAVFGHEELFKRLKVVTED
Ga0223845_10551398377	F048027	AGGAG	MTKEVKKVTIDARVRAIAKSGSGKGVGMPNWFTLPQNKEKRALHIDICKKLAELSEKHDNYPITYLVYFAVGKNAHRLCTFLGGYDKIDEKKAETIFKWLTLFAKHHKNEKLFKNPNVAHALCRFYDKYSTKTKDFKDALEKMEKNPKIDVKNAKMAVEGLGIAKKVEETAPAEEMEMAMAAAE
Ga0223845_10551398509	F051619	N/A	MDNSTVNWEEVRINASINIMNAILSSSIMVFIFQFIFKRQVADIAVEYADRLVEELKKKG
Ga0223845_10551398562	F063246	N/A	MAKLKIELNDIQNIRDLLQETYRLADEQIVQAQNEINKLSVSTQLEQEAMDAKSKYAKAINDYLGMKDKAISKKLDIAKILTDIYHHNGDVKSAMENGENMKNMDFNFDDIKKMIDESYEEKDKDKTKTIELNKK
Ga0223845_10551398586	F028722	N/A	MANTVQNGQTCLEKRGMEERHQEITRSDYNIENQYGPTHPDAMSDGDAQGKGTGHGGHTHFLPDCTKPTTQINYSNFDTENGGGYYDIKGRNGISGRERALAISMYNKEVPYGANLVDTTQNVNDGQYFFGQQIGQKTTT
Ga0223845_10551398602	F057815	AGGA	MAKKIKDSDILKAMAMHLDEDSVVFGANGHYAVGAYYDITKVSSVFGDKDYNSQDAIDAADSTEAAEKYRTDDDKMIENFQKAEWLKEF