Scaffold Ga0213876

Basic Information
Taxon OID	3300021384 Open in IMG/M
Scaffold ID	Ga0213876_10079615 Open in IMG/M
Source Dataset Name	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1732
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1732

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.2822	Long. (^o)	-43.5936	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brazil: Minas Gerais

Coordinates

Lat. (^o)

-19.2822

Long. (^o)

-43.5936

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F006575	Metagenome / Metatranscriptome	370	Y
F029856	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213876_100796151	F029856	N/A	DGYATADRALRRAGIGFFGLRAVLRVMSPAESDALLGVAAGASLDDDRALFRDTEWPVEQVEKFKPYSTASLLAFAKEGFHD
Ga0213876_100796152	F006575	AGGA	MTDAASPYLALRQAVRPAILAHRLLAGDQERAGKLAAECEDLLFLTGELLKAAGRARLLSPPSGPPPQVPNDDGGGRHSQLLDAYAEAGQLWAKVVGSCLALAGALIERGDWDDVRALAAFLASSGEEEAAAELRLVLGNAVWRRHREPLRGVSNTMTPAAIGAAIGALRAVLREVPEEYPDRNREVNRFLPPLAASVYALMKEQQVEIPYHSRVEHIATGGVAKYPDIVTMSLDELAAEFEGVCRRTT
Ga0213876_100796153	F001698	AGGAG	MSGVVNDIEALAEFRSHLMRFNHDLAENFATIQAHWRDLGEVWRDDMYRMFGEALEEVLPGITAYLAATEGHEAHLAALIERLGGYLETGAGAGLGVGRAEVNRAQRAGSGSGTGRRDRGPR
Ga0213876_100796154	F002850	GGA	VTAVHADIDALKNLHGALVRYRHAQRDVAARASDQLRMTRSRLEERASRLRAQAELAQAEYAGCRDRAAQADPDDPVDCSGYARAAEQSAGQLEQVQLWQQRVETGAGEFSGVAGRFAELLD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213876_10079615

Overview

Ecosystem & Geography

Associated Families

Sequences