Basic Information | |
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Taxon OID | 3300021384 Open in IMG/M |
Scaffold ID | Ga0213876_10000054 Open in IMG/M |
Source Dataset Name | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 136221 |
Total Scaffold Genes | 109 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 84 (77.06%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil |
Source Dataset Sampling Location | ||||||||
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Location Name | Brazil: Minas Gerais | |||||||
Coordinates | Lat. (o) | -19.2822 | Long. (o) | -43.5936 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F062146 | Metagenome / Metatranscriptome | 131 | Y |
F079676 | Metagenome / Metatranscriptome | 115 | Y |
F081092 | Metagenome / Metatranscriptome | 114 | Y |
F091480 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213876_10000054102 | F062146 | AGGAGG | MPFITATREDGATLLVNVDRIQYVAYQDAAGQEVLSVVFDANPPAQGRPGTNEIVVHGEEARRVWAALGSMLGL |
Ga0213876_1000005459 | F079676 | AGGCGG | MSAETAGPGAGIKAGDHVRALDGAYKGKVGTALRVVTSHDEGRTSQSILVSFPAGGADYLDAAALEKTEAGSE |
Ga0213876_1000005460 | F081092 | AGGCGG | VNGYDDFIERLEDALADDEGREAFLEYLQGLTKEGRAEILAEADRREAETEAESA |
Ga0213876_1000005462 | F091480 | N/A | MRDLHVYVDPAGPDGRGQDEVFYSRRADGPYYRWVYAEGAGGWHFSRVPLSRLRLRVLCVAPWNAVPAALRDRLGEHYLE |
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