Scaffold Ga0213864_10117474

Overview

Basic Information

• Taxon OID: 3300021379
• Scaffold ID: Ga0213864_10117474
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1328
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001873	Metagenome	623	Y
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_101174741	F001873	N/A	MEIEMRWWNIAAALAVLAGGAEAGVIVMSTDYTAGGVFVATPNDGKGDLIQWDLTDSCGGGSVWLNADGFHNNHLDRQYESGGFRYGIKRIPGAVPDDISEFVTVDWIQHHRDGAVEFGGNDSRGMVEMFAERDISLQPGFLEITLRNDHEYALWSVNGQLLYEHITNQSNLQTFRHDLPNGLQGLRFDFSGSGTADGVIEHIEYHEYGTTVPEPSIGDLIDLIGSGVGGL
Ga0213864_101174742	F002942	GGTGG	MSEEQFTAFCVLLAAVSVPSISLLFLGAWDLWSYSTKVQP
Ga0213864_101174743	F004131	AGG	MRATRTTVVADVSQFPFNAMRRQLITPLVREAAELLWPTEERRVTVLLRAPEFWDECTKADLEASEELADICFDLWVGAMA