Scaffold Ga0213864_10056880

Overview

Basic Information

• Taxon OID: 3300021379
• Scaffold ID: Ga0213864_10056880
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1880
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008547	Metagenome / Metatranscriptome	331	Y
F032086	Metagenome	181	Y
F052535	Metagenome	142	N
F099219	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_100568803	F052535	N/A	MKRQYKVLALDASNKPVKILTITENSKPKAKATGQRLAKALGQRFHDIKLIKE
Ga0213864_100568804	F008547	N/A	MSVTIYLTDHNGRKVAFFYRIDNERYLTCPQLIWACRQHPEYQGTAESKEHFIEQAKDVMKQLNKISQNNRSTCEKIPCDTCGLTSPKMEAQLTCPECLTETATNK
Ga0213864_100568807	F032086	N/A	MTDNLTDQQFLPMNDLCDDSLEALIQHYLSVQQKLPNNLAVRERLLELEREQFEREKETNDN
Ga0213864_100568808	F099219	GAG	MIPTGLFTRTIHGYDEWLNRYNPYDDEIDEELEEHLEKMREMDNIDDQKDYCDDHHLKYRDIEAWL