Scaffold Ga0213864_10048903

Overview

Basic Information

• Taxon OID: 3300021379
• Scaffold ID: Ga0213864_10048903
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2017
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F056586	Metagenome	137	N
F073499	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_100489031	F056586	N/A	YRGGDTVKHTYQVIMTKVYEVKVEAESREEAEEIFDNFADWEELLRVHTLDVEPADTLVLREED
Ga0213864_100489036	F002858	AGGAG	MLIDEKSIYEVTGGDYSVYCFGYTQARTVTNDIMRRDPWGGIPFVIRKDLEVSFDDKGNVVMSRQTLDKILFIASDELPQAETTSTEGDE
Ga0213864_100489038	F073499	AGGAG	MMTDQQIEQWMRDNPWKANVIYPAGGIGFMMFVMYTCIQIIDSFLTGSFI