Scaffold Ga0213864_10034532

Overview

Basic Information

• Taxon OID: 3300021379
• Scaffold ID: Ga0213864_10034532
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2370
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033412	Metagenome	177	N
F034560	Metagenome	174	N
F055697	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_100345322	F033412	GAG	MTAEIDAEFWRVLLAAWGCFAMGGAIWHYRAELQGYGLQPVGRLLLAISPALLSAFGYHSTQAVRTVELMAQAVPVRHVGHEIEPVIADRDTITTQGGAKIDYIRSNYGTGRWHAGSVRVRDEQTGRRSESGRRGLASAGAGVTGSVSVPLW
Ga0213864_100345323	F034560	N/A	MADDSETPQTDDEDGIEWRTLNRTVRVDAATSQKLIDWIGPHLRLIVAAVAWGVFVIATCYAASLVL
Ga0213864_100345324	F055697	GGAGG	MRTAAAVFCFCTVLHFPVPDQWKFTIAEPPAASQPDWYLVSFGADWCGPCRAWKRDHLAATREVLPVVTVDITKAPEWKRSRQLAAPPGGRATIPGITRVPTFWLVHRASRWPVKTWVGGRAAEQVRRLIPDTVPEWTRDTEAAPPLPE