Scaffold Ga0213864_10033799

Overview

Basic Information

• Taxon OID: 3300021379
• Scaffold ID: Ga0213864_10033799
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2395
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001873	Metagenome	623	Y
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F052561	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_100337992	F052561	GGAG	MRKLSDIWLIGTQLAKHLQVSKTGLYRAAESGELRTSSTACGRLATTLQEAQRWLKQSRA
Ga0213864_100337993	F001873	AGGA	MMKWWNVLTVLAVLAGGADAGVILMSTDYTAGGVFQATPIDGKGDLIQWDLTDTNGGGAVWLNADGFHNNHLERQYESGGFSYGIKRIPGAVPDDVSEFVTVDWIQHHRDGAVEFGGNDSRGMVEMFAESDEVLNPGYLQVTLRNDWEYALWKLNGELLYEHTEGQSSLKTFRYDLPTGTEGLRFDFSGSGTADGVIEHIEFHEYSTVPEPSLGDLIDLIGSGVGGLIGL
Ga0213864_100337994	F002942	GGAG	MSEEQFTAFCILLAAVSLPGVSLLWLMAWDLWKYAKRAKP
Ga0213864_100337995	F004131	GAGG	MRAKRTTVVADVSQFPFSVMRRQLITPLMREAAELLWPAEQRRVTVLLRAPEYWDECTSADLEASEELADICFDLWVESGQ