NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213864_10030918

Scaffold Ga0213864_10030918


Overview

Basic Information
Taxon OID3300021379 Open in IMG/M
Scaffold IDGa0213864_10030918 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2495
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034389Metagenome175Y
F053259Metagenome141N
F076036Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0213864_100309183F034389AGGAMNLYKEAMSIAKEAMENAEGCFDTAQDCIHQMCDGHEISIYYHKAIQFCADHDTSDGEAWLEDCGGISQEGDSFGMIACRIAFATLLVAAQDALCELQDEIEDAA
Ga0213864_100309184F076036GAGGMTTRPHVTLAVDQTRRKLIEMQEQLNADAWQVIMDDYTHADAMQVQYLDNALELFAKLIDELERAR
Ga0213864_100309186F053259AGGAMEKQDWINTLKQMQHASAAYNALHEKQRDAIKDAICALREATRSLSDGFDLHLSDCRAIDTAFWKMHNAFEHMQPTEHQLTQLDLHNLEWDYDTQTWHEVEPSDETVDDWEPNPS

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