Scaffold Ga0213864_10004341

Overview

Basic Information

• Taxon OID: 3300021379
• Scaffold ID: Ga0213864_10004341
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6223
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F029123	Metagenome	189	Y
F048640	Metagenome	148	N
F053978	Metagenome	140	Y
F073277	Metagenome	120	Y
F087042	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_100043411	F087042	N/A	MNIELICIASFESMFDERLEDGVDLTPKYIEMLVKEHCEPYMIVTQGFTHDLLANALDYMNWEYIAYHIKHPVYRENKHEDLFKLQSN
Ga0213864_1000434113	F073277	AGGAG	MKLAVTIDVDGDIMYVPEGAVFENFPKPKLFDNMEDAEEERAKWNTGVIVNYETGESVSKIRSFTDAERARAEERARINRDDGTSTDQDTTQ
Ga0213864_100043414	F053978	GGAGG	MQLNELKPEYKQIIREVVVELFKEVADGKTFGVSDDVLQLDEHLNDWTGRKIDKYTVNVYGATLQEKY
Ga0213864_100043415	F048640	AGGAG	MQPKELHAHARIKFEPTRVQKQLECRLFGETFRSVAAAARKFELSASTVYQWHHERRHRETFPKTKRWDRWRTEHEVVDTNHANAG
Ga0213864_100043418	F006217	GGAG	MIELLLAMVEEQNPIHKYCMSKHEHWTGRAACVQELRHAQRKLEVERLRQFLKENPHYKYPGMALPNGKIKPLDVCWGSDKTYGTSKERRC
Ga0213864_100043419	F029123	AGGAG	MSYEVWFGHNGKWFGYHSFKHRMDAVRYELRYLKMFPKLTVEIRRKEHAS