Scaffold Ga0213864_10004218

Overview

Basic Information

• Taxon OID: 3300021379
• Scaffold ID: Ga0213864_10004218
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6315
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027502	Metagenome	194	Y
F048284	Metagenome	148	Y
F070060	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_1000421812	F070060	N/A	CMSYVVVDEGDFEVIGVDAYGILVKAAWGEQSFVSSWHLVDERKIQLTRRTKPADWDAKKRAKAQAVEGKG
Ga0213864_100042184	F027502	N/A	MQLNARQRQLRERDVRKLSPDLDANTFMRLYMESNFPQTASLPSPQQMERGLDTNNLQDPIKLAKKPLSGTKYDNPGGF
Ga0213864_100042185	F048284	N/A	VFSKADYELAARILGLPVPQTPAEQAAAAPATAEVIRRFGQGRPPMPGMEPGGFYTGSTHSLNGYPDNTMPMQRAQLASRLRTEPERPHEDAYLMELIQSLDPDEFQIVIMLLEQLAQQEDEESDRLSSQRPLEYDTPNLGSNYSVLNAPSSNGIEPSRAFQPLS