Scaffold Ga0213864

Basic Information
Taxon OID	3300021379 Open in IMG/M
Scaffold ID	Ga0213864_10002809 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021379 Open in IMG/M

Scaffold ID

Ga0213864_10002809 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7656
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7656

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y
F047028	Metagenome	150	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_100028091	F047028	N/A	CMISTRSCKPPGATSPMSDLSRGAAALVKNLFGGNETERMISAGVVRTILSDMTRLYFENRAALGEGILVFNPENPETSKYLTKTDLENDLAVAQEGMDERAEALFSKIIRVIEKESDSDLALIAMVQSNEICVHLVDPVEANKKIDELSNSLIL
Ga0213864_1000280912	F015724	GGA	MARRKGSDDFGWNGHQPKKSKFGFSSFEGASSAHQLGSPMPFKRKFRPDFNLKDFSILFDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGIVGVGAALPGVCYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYAIKTVTKTSDTVYAVELTSNFGPPISFFTGEVISDRFAADGTEKTTYNNYTVVGVGNGTTPLTPSFAPIFNSIFISLDTNNSWSVIDNETLSAPASPPAPGDYFTTEMRFGCNCPDYLAREDFNLYEYSLKRRYPYTLPQDLKPGSYDAGKDYLANRTSPSRDYPGFSRDFGFLYVKKILDLPSYTDGSKVYSDPNLLYFAPRWCKHIYASFWDMQNRFGEDVFSKAWLSQPTDEPMDDRYREEFEVNLIKQTTFEKRQQRLRWWEKYSPSQNTVPNHMMYPDMHPTMIKTLNFDTLASGTTTPMTASGFEMFKITEYDPFAPPDPDVTPKLDGGIYFNGVLVSGATLIYDGGQYANGALIPYPSYPSLINGGTY
Ga0213864_100028097	F023840	AGGA	VKDEHGHIRVGLTLEDDFTLQRLKNAAHALKGEARDQYLWKTIFRFVCRERAYKSVMEEIGVAIDTNIDIFEDSENE
Ga0213864_100028099	F008401	N/A	MDHARLLTIAQTAELLNCSAGFVRKRIMLTESNQPGGWPKGIFVNLQPNGVKSLYRINKDALEAYLNSGAEEAKVEESAACAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213864_10002809

Overview

Ecosystem & Geography

Associated Families

Sequences