Scaffold Ga0213864

Basic Information
Taxon OID	3300021379 Open in IMG/M
Scaffold ID	Ga0213864_10002583 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021379 Open in IMG/M

Scaffold ID

Ga0213864_10002583 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7979
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (96.55%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7979

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (96.55%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026855	Metagenome / Metatranscriptome	196	Y
F028484	Metagenome / Metatranscriptome	191	Y
F037687	Metagenome / Metatranscriptome	167	Y
F041146	Metagenome / Metatranscriptome	160	Y
F042289	Metagenome / Metatranscriptome	158	N
F074770	Metagenome	119	Y
F105002	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_1000258312	F105002	GGAG	MEYFNKWYAVMQWDAFDKQYVELVKRPQKHLCYEYINDRKLRNAKVVAYYW
Ga0213864_1000258313	F074770	AGGA	VNADPTGFEDAWADIYWTFAHDDMAFDYRDRYFKERFLRVKAGLVDFEKLTIVK
Ga0213864_1000258317	F041146	GGA	MPEKIHLYQIDGGYTYWEAYSDYTNNYLFSLDNDDVGDYIAQNKDKDIRVYPQEPYNAMYHFHLEMDKWWGSKDYHVDDCDSLHVPRIPLDYMCEGCRIFEDWTKNKTYGDYDKIGAKK
Ga0213864_1000258321	F037687	AGG	MMIFTYDKVKNDIWEVIKDRTDFVYEPSNECDVCTDHNDWEYDPEGYGEEPPTCNAHYDGDACRYFYADNRGFSNCDTPACVVGNWFVHAKLSPEDLNVSGWDELEGQGVRTILERAHWDIDEDTFSFLNLMQTYQDTGISWGNAYEMAVAKTEGNDE
Ga0213864_1000258322	F028484	GGAGG	MSRQDGQPQIRKLGNDYYINIYDVIEILNAFSDFSLDEFMAKAEKDLDEFECGWFEGDQARLEHLLNLFSMLVAEKRLEKIDNIEKLFQEFPSEKFIRNRSVNS
Ga0213864_1000258329	F026855	AGGA	MAMYEVEVEGRYTAVIEVEADSPDEAESEAIRTFEQDYDVVANQGAESWDYTGICGVEEQEDEE
Ga0213864_100025834	F042289	AGGTGG	MIDGIFRIEEVRADECPDEFLTRVGNANVTVWRNRLADYDGKLCFSFPYISWCGDMYVNADEPMAILVEETWEEAALEIEFDLMKKGLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213864_10002583

Overview

Ecosystem & Geography

Associated Families

Sequences