Scaffold Ga0213864_10000136

Overview

Basic Information

• Taxon OID: 3300021379
• Scaffold ID: Ga0213864_10000136
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30996
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (78.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F016657	Metagenome / Metatranscriptome	245	Y
F058817	Metagenome / Metatranscriptome	134	N
F091647	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_100001361	F091647	N/A	MKIIKRAIKLSYDRFKPNPYQRRYHFAIAFNVNKPICIAQNNPIKINHKAYKIGQKFNISKYQEYPYSHAESHLISKLLDTYNTIRSDWSLVVLRINRQGKILLSKPCDNCQSILDAVGLSRVYWSIDKNTFGYGSKELIQV
Ga0213864_1000013633	F016657	GGA	MYRNIDEDIRLLTMARRYWTEEQLSKEQVHWVLKGEGYSEREIDNAISDYYSIHIRSNIMLHHFIAPVVLVIVMIVLVLKVYSLLK
Ga0213864_1000013675	F000325	GGAG	MKTANGNDKLGKENCIVVSRPVGDTCPSSCAFLGNGCYAEQTEKIYPGVRPAGMQNVITERGRIRSMIIDAERKGKSIRWHERGDWFLNGKLDTDYVDNVVWACESILADGGSLPDMWFYTHIYDSRLVSMNKYMAVYASVHNAQDVLDAKAVGFKLFAWCDSDEKIATKRPRGKVKAQQWRDSLPKLVVIDNEKYVTCPEIRRGRGVVTCTPTKNSVACNLCVKGLANVLFPSH
Ga0213864_1000013683	F058817	GGAGG	MDDINTTLLIAALEAEGIVEPCDDIDCHPLDWMEVVGVDLFDECWNPEEAY