NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213864_10000060

Scaffold Ga0213864_10000060


Overview

Basic Information
Taxon OID3300021379 Open in IMG/M
Scaffold IDGa0213864_10000060 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45111
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (84.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009636Metagenome / Metatranscriptome315Y
F010201Metagenome / Metatranscriptome307Y
F059720Metagenome / Metatranscriptome133Y
F065836Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0213864_1000006020F010201GAGMKIVIYETLEEAIGAAKLMCEVLETYVKITKCEGGFELFGSGEFIMEVKE
Ga0213864_1000006026F009636AGGAGMGYFYQDWKEKKMFVENADGQFVMNFGEAEKSMIENLENAIINITEGASDEKRMGIGYMEYLADCLKKGKLEVKWNIS
Ga0213864_1000006060F065836N/AMYTYVENKDQSWTGIGLTKEAGKYQGVVYRYGEVSVKEDKENDSASLQFDFDVLDSNGLPKEMINDDFFKIIGDVLQDILTEQLDKDELQYVNTDDRKNDTQ
Ga0213864_1000006064F059720N/AMVNGAEIIGRFVDESDTHITLYKPRMVQVTQQGVGLVNGISMTGKEPDGNFSFARSSIMFMLETVSELATGWTSQTSGIQLPPKGIV
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