Scaffold Ga0213864_10000037

Overview

Basic Information

• Taxon OID: 3300021379
• Scaffold ID: Ga0213864_10000037
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55767
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (92.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004209	Metagenome / Metatranscriptome	448	Y
F078574	Metagenome	116	N
F080648	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_1000003729	F004209	AGG	MWIGILLVCFDPMALSCKVIAKPEPFYSEEACLKEAEQITNTIRQGGAYATPHCHKVEGNSA
Ga0213864_1000003738	F078574	AGGAG	MNIEKYYKQLIGGTIVGFKWYEDEYLLEPMPVFTLSLGGKKVELTLSMDEEGNGGGFGFIEVAK
Ga0213864_1000003740	F080648	AGGAG	MTELHRYDPKTWLETVYEALSKIHPDAMTEESWDDVMSAMSWITEDFNFELDTDPDSPTNGELVRI