NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10237918

Scaffold Ga0213861_10237918


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10237918 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)969
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F026537Metagenome / Metatranscriptome197N
F068220Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0213861_102379181F008453N/AMSNYAVYRVFRDWEKRPQVLMNGLTREQAQTIVKNTPSNDNSMVVFDEEPRDKQ
Ga0213861_102379182F026537N/AMNKKYHMKKEIINRLEYVEETYAGELETWHDPVTDTYYHVPIEITRRWDESEALINDKANTMTHERKEQHIKQLAFSIQHGAAGYVTDNFVIEDLPVPQRTGTMTQQDTYAKHKARQIFDAFLEQNPNIND
Ga0213861_102379183F068220N/ALALLMKTEHEEVITHTDGTQDIIVINDDESHHEILKIVEVNPLWDTDHFNPANSSTREWLMWNQMESEVMYDGEYLPTDMGCIKEATDILYGTNESMLMEPWADFVGGIFYRGAAMLDADDVCIHFFRIPKSDTL
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