NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10212668

Scaffold Ga0213861_10212668


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10212668 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1046
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037973Metagenome167N
F062240Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0213861_102126681F037973N/ALITMTFGFSLLGLANAESFLDSPSLFDDSGSFNFADSNTNSGDNSFYKDDGSLVIIRGAKDSGLIVRGTDEGTETEYYVIPKDDGSKTFIYDEGLTVCDSNGCY
Ga0213861_102126682F062240N/AMTKNEKEEMLKQVLANAGYDYEPKPRNDGDEIWTPCGQDIPKEPKPISKETKDKLLKAKRSNRLKGFLDEE

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