Scaffold Ga0213861_10100166

Overview

Basic Information

• Taxon OID: 3300021378
• Scaffold ID: Ga0213861_10100166
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1728
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F008882	Metagenome / Metatranscriptome	326	N
F008887	Metagenome / Metatranscriptome	326	Y
F024204	Metagenome	207	N
F052476	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213861_101001661	F008882	N/A	LINSYIVGHLMNIKRYNFNKPKINRQELELLNFFLAHTDDNPLINPKALELFKANGYSAKNYQDLVNKVKTILKTYKTKGEL
Ga0213861_101001663	F024204	AGGGGG	MNNYSYLEILEDGIEVCASCGGANINANRNIDDQDNTKPQDHCFNCDYAEGINLCMPNDLYFYQEAKETLNKINKGEL
Ga0213861_101001666	F004343	GAGG	MTQHKEMIEEAKRLLNTEMENIPSMSGDFSKDYWLLTYPCGKIVKTYEDKRKKDVIIQESYSGGEL
Ga0213861_101001667	F008887	GGGGG	MSRGCCNECGYKADYIIDNNNYADNGYEDLNQVPKDKMLCGVCYEENEDE
Ga0213861_101001668	F052476	N/A	MILENLFDNVLDQDKKGLLDDDIKDIAREQGLDIYNNRYEILEIITNRIFECKYD