NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10043607

Scaffold Ga0213861_10043607


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10043607 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2933
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033051Metagenome / Metatranscriptome178Y
F073555Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0213861_100436072F073555N/AMDLLMFIFHTVMMFSGVTVPLEVVKYPKTLMLINRLALIVLIIYLMLXVIEN
Ga0213861_100436074F033051N/AMKLALLKILEIILPQFIKSIFNRKEKKRLIIDLENHDVFSTLDRVRNEVANLKFYTHGEYDKVKTRMCYDFTKHKSIKCSARMLEIVRTKDIDTMDRDKLKKLILLEQGDMHREYIKAIRIEWDLKGVSPQDVDYVIHLFEKFRYDVIVSFEHRINSIFGSSYNKDNFALMLAVLEMWAMGIDLLPRDMSTTFESLNGKFKDIKYLS

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