Scaffold Ga0213861_10029545

Overview

Basic Information

• Taxon OID: 3300021378
• Scaffold ID: Ga0213861_10029545
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3723
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F014804	Metagenome	260	Y
F018080	Metagenome	237	Y
F024889	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213861_100295451	F014804	N/A	YDWIDEALDGEPSGITNTQWLIIESNIDLTSFTESMKSDILGRINDLTELEAEEIITKMYENRYEKDTRKQWEKMCKDGVFGHRDF
Ga0213861_1002954510	F024889	N/A	MNSATIGALIIVGFVILYIFAVCYIEGKIARKENDSLENNIDKLDDKA
Ga0213861_100295452	F018080	N/A	MEYLDIEIFNHFLKVYTYIIWNKKHILGEIAEDDILKLLDKIQLIDFYHIGKTKFKVEKSKVEKYIKTDDK
Ga0213861_100295456	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGNQEHSIQQLGIFAELIARHLMENNKGIRYKAAPLLEERPVVEADLIMEGIGEFNYIDVKGVRSGGNTLRINFKAHNNPQKKITHYLFIQPLNALYARFCWFTHEQVSKWTVVMSTYTECYELEIPKNN