Scaffold Ga0213861_10015122

Overview

Basic Information

• Taxon OID: 3300021378
• Scaffold ID: Ga0213861_10015122
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5568
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007609	Metagenome / Metatranscriptome	348	Y
F054361	Metagenome	140	Y
F060349	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213861_1001512214	F060349	N/A	MNKHQKKVLKQYPNAYVEHSIDGVRVMNGDRFLAEEFYMPNTNDDDVAWEHAAMSCRLTQNFNRAHPARMDLSDVESKLHRIHKRKRRGRRVK
Ga0213861_1001512216	F054361	N/A	MGYVNNTAQYDQKKVRKNGKLYGSIDFEVNDNLSTYNFENNEAPIVGKLHIGNKAFEVTYQELDMIARTMNT
Ga0213861_100151224	F007609	AGTAG	MITIENISTGEVFEGDELEFFVDDETLIGEVYLDGDLVFQALDVMNDHQLDHALKLDYKVSKEAEDIFSDFNQE