NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213874_10182742

Scaffold Ga0213874_10182742


Overview

Basic Information
Taxon OID3300021377 Open in IMG/M
Scaffold IDGa0213874_10182742 Open in IMG/M
Source Dataset NameRoot-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)747
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.2822Long. (o)-43.5936Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008262Metagenome / Metatranscriptome336Y
F035648Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0213874_101827421F008262N/AAAAGLTAIKEAHGKAAATCFELDADTEVETQDHGTMTVSELERLLRRRRASDSAPVTLRCSGTFHDPTRVRTDSHLVNWGRRCGFGIYDTMTETTWHRRERAPSARFEFLGELQARNPFR
Ga0213874_101827422F035648GGAMNEHCTFEANRNTFDGDAISRADREFLASLSDHALVRHPLYSVPPPPRPNYEGCSTIADRQAAQEACFPAALDWMLVNYAYYSGAFIGKGGVISLGDGEIYAIASLRNFMQPYVIVEQGPMGGLKKTS

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