Scaffold Ga0213874_10009851

Overview

Basic Information

• Taxon OID: 3300021377
• Scaffold ID: Ga0213874_10009851
• Source Dataset Name: Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2377
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.2822
  • Long. (^o): -43.5936

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020613	Metagenome	223	Y
F025602	Metagenome / Metatranscriptome	201	Y
F089351	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213874_100098512	F089351	GGAG	MRARGWALLGSLVINLMLALVIVTVFSVSRPARAAESAQCPTHPAPTGRQSPAPPARSGQRYIVAVRMGWAMG
Ga0213874_100098514	F025602	AGGAGG	VRPFSSECPKCGHERLLTGYVPEELLELLRAGAEIEGYCISCDEHWAIATDERADLARALGQSK
Ga0213874_100098517	F020613	N/A	AACLRSSGMAEPFTLRERWFDVSALEFEAFLRDYPRPLDTRPPLSQKANYREWVDPSIGAWPGNAVGKSWKRGACLGYQIRLDLVLRVSAQERWNCAWCD