Scaffold Ga0213869_10116389

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10116389
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1282
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F020816	Metagenome / Metatranscriptome	222	N
F032048	Metagenome / Metatranscriptome	181	Y
F035272	Metagenome / Metatranscriptome	172	N
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_101163892	F032048	GGAGG	MSNTHNEQTLEQIYEQVLEDDAKLLLTEDIDEICYLYELDADDDRETILEFLAESIYYNQHTMEVEK
Ga0213869_101163893	F020816	GGAGG	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWDVYKDDLRITNVKVWEEDDE
Ga0213869_101163894	F004856	AGGAGG	MSKWLEGTKPKIIEARYSAYLSWDLDELGIDWDEVADWDLLRADLEITFKDGTKKTYENWQDLDIDYKHNFEEVLILDEDFRKVEGLN
Ga0213869_101163895	F059441	AGGAG	MKTWSSTITYTVFDMGRDCETEEEYKEWVKETFIQDHDIYLTDNEITNIQKEESYNE
Ga0213869_101163896	F035272	N/A	RELLNILHIEVESKLCDVKVEEAFDDVWDMVDEIDTTQEIT