Scaffold Ga0213869_10075673

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213869_10075673

Scaffold Ga0213869_10075673

Overview

Basic Information
Taxon OID	3300021375 Open in IMG/M
Scaffold ID	Ga0213869_10075673 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1684
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019631	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100756732	F019631	GGAG	MKYFVAALFALIPTTAISQEMNKADMITEFTDIATLVAAEVLNCGETNKERVLRFNAMFDSFMLYTAQQEGVELTQGDVEAFKLNLLMQQYEGMLRAHPVQGCDGINKIIHIYDDRMHYAESVYDYYQPLDSL

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